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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015815246.1_cds_XP_016498241.1_12291
CDS Infomation

[gene=LOC107816989] [db_xref=GeneID:107816989] [protein=protease Do-like 2, chloroplastic isoform X2] [protein_id=XP_016498241.1] [location=complement(join(23057..23304,23392..23452,23576..23626,23918..23989,24075..24099,24222..24307,24394..24481,24891..24994,26796..26852,28263..28342,31939..32038,32627..32685,33365..33431,39688..39765,40343..40450,41893..41937,43150..43213,43491..43564,44286..44336,44903..45064,47785..47991))] [gbkey=CDS]
Sequence

ATGGCAGCTGCAGCTGCAACGTGCTGGTTCTCTGCCGGCACTTCACTATACTCTCTAACG
TCCTACCGCTTCTCAACACCCATAAGACCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTTATTTATTCCTAAAGCTGTACATCAGAATCAAGATCCAAAG
AAGGGTCTCAAGAATTCCACCTCAGAGAACTTCCCATGGAGATCAAAAGACGAAAGGCAT
TTAGCAAATAAAGATGGTAGAAGCAGTAAAAACGAAGCAGGGCGATCTCAATCAACTGCA
TTTAAATCATCTGGTCAGCAGAGGAAAGGAGCAGGAAAGGGAGCTGTATTTGAGTCAAAG
GAGCAGCAGGTAGAAACTGGTATCATTGAAGATGCAACTTTTCTGAATGCTGTTGTGAAG
GTTTACTGTACACACACCGCTCCAGATTATTCCCTCCCATGGCAGAAACAAAGACAATTT
GCAAGTACAGGAAGTGCTTTCATGATTGGTGATGGGAAACTCTTGACAAATGCACATTGT
GTTGAACATCATACCCAGGTTAAAGTGAAGAGAAGGGGAGATGACACTAAGTATGTTGCC
AAGGTTCTGGCTAGAGGAGTGGAGTGTGATATAGCCTTGCTATCTGTTGAAAGTAAGGAC
TTCTGGGAAGGAGCTGAACCCCTCCGCTTTGGACACTTGCCTCATCTGCAGGATGCTGTA
ACTGTTGTAGGTTATCCGCTTGGAGGAGATACTATTTCTGTGACCAAAGGGGTGGTATCA
AGAATTGAGGTCACATCATATGCTCATGGATCATCTGAGCTGCTTGGCATTCAAATTGAC
GCAGCAATAAATCCTGGTAATAGTGGCGGCCCTGCATTCAATGACGATGGAGAGTGCATA
GGGGTGGCATTTCAGGTTTACAGGTCAGATGAGACTGAAAATATTGGTTATGTCATCCCA
ACTACTGTAGTGTCTCATTTTTTGGAAGACTATGAAAGGAACGGGAAGTACAGCGGTTTT
CCTTGCCTTGGAGTATTGTTGCAAAAATTGGAGAGTCCAGCACTTCGTGCCTGCTTGAAA
GTGCCTTCGAATGAGGGCGTACTCGTGCGGAAAGTTGAGCCTACTTCTGATGTTAGCAAT
GTCTTAAAAGAGGGAGACGTGATTGTTAGCTTTGATGGTGTCCATATCGGGTGTGAAGGG
ACAGTGCCATTTCGATCTAGTGCACGCATTGCATTTCGCTATCTCATCAGTCAAAAGTTC
ACTGGTGATGTAGCCGAGCTTGGTATTATTAGAGCTGGGGAATTCATGAAAGTTCAAGCA
GTTTTGAAGCCACGTGTGCATTTGGTTCCTTATCACATAGAATGCGGTCAGCCTTCATAC
CTAATAGTTGCCGGCTTGGTGTTTACACCACTATCCGAACCCTTAATAGGGGAAGAATGT
GAAGATAGCATAGGGCTAAAACTATTGACAAAGGCTCGATACTCTCTGGCAAAGTTCGAC
GGAGAACAGATTGTTGTACTATCACAGGTCTTGGCAAATGAAGTGAATATTGGATACGAG
GATATAAGCAATGAGCAGATCTTGAAGTTGAATGGTACTCGAATTAGGAACATTCACCAT
TTGGCTCATCTAGTGGATTCTTGCAAGGATAAATATCTAGTTCTCGAGTTTGAGGACAAC
TTCCTGGTTGTTCTGGAAAGGGAAGCAGCCGTATCTGCGTCAGCTAGTATTCTTAAAGAC
TATGGTATTCCAGCTGAAAGATCATCCGATCTTTTGGAACCATATATTGATTCCATCAGA
CCAGATGAAGCAACCGATCAACACGAGTTTGGTGATAGTCCAGTTTCTAATTCAGAATTC
GGCTACGAGGGGCTTCTTTGGGCTTGA

Peptide Sequence

PEP ID

XP_016498241.1
PEP Infomation

PREDICTED: protease Do-like 2, chloroplastic isoform X2 [Nicotiana tabacum]
Sequence

MAAAAATCWFSAGTSLYSLTSYRFSTPIRPFSSSSSSSSSSSSSSSLFIPKAVHQNQDPK
KGLKNSTSENFPWRSKDERHLANKDGRSSKNEAGRSQSTAFKSSGQQRKGAGKGAVFESK
EQQVETGIIEDATFLNAVVKVYCTHTAPDYSLPWQKQRQFASTGSAFMIGDGKLLTNAHC
VEHHTQVKVKRRGDDTKYVAKVLARGVECDIALLSVESKDFWEGAEPLRFGHLPHLQDAV
TVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDDGECI
GVAFQVYRSDETENIGYVIPTTVVSHFLEDYERNGKYSGFPCLGVLLQKLESPALRACLK
VPSNEGVLVRKVEPTSDVSNVLKEGDVIVSFDGVHIGCEGTVPFRSSARIAFRYLISQKF
TGDVAELGIIRAGEFMKVQAVLKPRVHLVPYHIECGQPSYLIVAGLVFTPLSEPLIGEEC
EDSIGLKLLTKARYSLAKFDGEQIVVLSQVLANEVNIGYEDISNEQILKLNGTRIRNIHH
LAHLVDSCKDKYLVLEFEDNFLVVLEREAAVSASASILKDYGIPAERSSDLLEPYIDSIR
PDEATDQHEFGDSPVSNSEFGYEGLLWA

Transcript Sequence

Gene sequence data has not been registered.